Dr. Liangjiang Wang - Full Publication List

Journal Articles

Wang, L., Irausquin, S.J. and Yang, J.Y. (2008) Prediction of lipid-interacting amino acid residues from sequence features. International Journal of Computational Biology and Drug Design, 1:14-25.

Tribolium Genome Sequencing Consortium (Wang, L. as a coauthor) (2008) The genome of the developmental model beetle and pest Tribolium castaneum. Nature, 452:949-955.

Park, Y., Aikins, J., Wang, L., Beeman, R.W., Oppert, B., Lord, J.C., Brown, S.J., Lorenzen, M.D., Richards, S., Weinstock, G.M. and Gibbs, R.A. (2008) Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. Insect Biochemistry and Molecular Biology, 38:380-386.

Wang, L., Wang, S., Li, Y., Paradesi, M.S.R. and Brown, S.J. (2007) BeetleBase: the model organism database for Tribolium castaneum. Nucleic Acids Research, 35:D476-D479 (Database issue).

Wang, L. and Brown, S.J. (2006) BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Research, 34:W243-W248 (Web Server issue).

Wang, L. and Brown, S.J. (2006) Prediction of DNA-binding residues from sequence features. Journal of Bioinformatics and Computational Biology, 4:1141-1158.

Wang, L. and Roossinck, M.J. (2006) Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants. Plant Molecular Biology, 61:699-710.

Wang, L., Zhang, A. and Ramanathan, M. (2005) BioStar models of clinical and genomic data for biomedical data warehouse design. International Journal of Bioinformatics Research and Applications, 1:63-80.

Zhang, Y. and Wang, L. (2005) The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evolutionary Biology, 5:1.

Saha, M.C., Mian, M.A., Eujayl, I., Zwonitzer, J.C., Wang, L. and May, G.D. (2004) Tall fescue EST-SSR markers with transferability across several grass species. Theoretical and Applied Genetics, 109:783-791.

Eujayl, I., Sledge, M.K., Wang, L., May, G.D., Chekhovskiy, K., Zwonitzer, J.C. and Mian, M.A. (2004) Medicago truncatula EST-SSRs reveal cross-species genetic markers for Medicago spp. Theoretical and Applied Genetics, 108:414-422.

Duran, A.L., Yang, J., Wang, L. and Sumner, L.W. (2003) Metabolomics spectral formatting, alignment and conversion tools (MSFACTs). Bioinformatics, 19:2283-2293.

Watson, B., Asirvatham, V., Wang, L. and Sumner, L.W. (2003) Mapping the proteome of barrel medic (Medicago truncatula). Plant Physiology, 131:1104-1123.

Dixon, R.A., Achnine, L., Kota, P., Liu, C., Reddy, S. and Wang, L. (2002) The phenylpropanoid pathway and plant defense – a genomics perspective. Molecular Plant Pathology, 3:371-390.

Wang, L. and Wessler, S.R. (2001) Role of mRNA secondary structure in translational repression of the maize transcriptional activator Lc. Plant Physiology, 125:1380-1387.

Casa, A.M., Brouwer, C., Nagel, A., Wang, L., Zhang, Q., Kresovich, S. and Wessler, S.R. (2000) Inaugural Article: The MITE family Heartbreaker (Hbr): Molecular markers in maize. Proc. Natl. Acad. Sci. USA, 97:10083-10089.

Liu, Y., Wang, L., Kermicle, J.L. and Wessler, S.R. (1998) Molecular consequences of Ds insertion into and excision from the helix-loop-helix domain of the maize R gene. Genetics, 150:1639-1648.

Wang, L. and Wessler, S.R. (1998) Inefficient reinitiation is responsible for upstream open reading frame-mediated translational repression of the maize R gene. Plant Cell, 10:1733-1745.

Refereed Conference Papers

Wang, L. (2008) BindN+ for improved prediction of DNA or RNA binding residues in protein sequences using evolutionary information. In Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology (BIOCOMP’08), in press.

Irausquin, S.J., and Wang, L. (2007) A machine learning approach for prediction of lipid-interacting residues in amino acid sequences. In Proceedings of the 7th IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2007), eds. Yang et al., pp. 315-319. IEEE Press.

Wang, L. (2007) A semi-supervised learning approach for prediction of DNA-binding residues in protein sequences. In Proceedings of the 2007 International Conference on Bioinformatics and Computational Biology (BIOCOMP’07), eds. Arabnia et al., pp. 421-426. CSREA Press.

Wang, L. and Brown, S.J. (2006) A support vector machine approach for prediction of DNA-binding residues in protein sequences. In Intelligent engineering systems through artificial neural networks, vol. 16, eds. Dagli et al., pp. 293-298. ASME Press.

Paradesi, M.S.R., Wang, L., Brown, S.J. and Hsu, W.H. (2006) Mining domain association rules from protein-protein interaction data. In Intelligent engineering systems through artificial neural networks, vol. 16, eds. Dagli et al., pp. 213-218. ASME Press.

Wang, L. and Brown, S.J. (2006) Prediction of RNA-binding residues in protein sequences using support vector machines. In Proceedings of the 28th IEEE Engineering in Medicine and Biology Conference (EMBC 2006), pp. 5830-5833. IEEE Press.

Wang, L. and Zhang, Y. (2004) Data integration and target selection for Medicago genomics. In Developments in Plant Breeding: Molecular Breeding of Forage and Turf, vol. 11, eds. Hopkins et al., pp. 275-288. Kluwer Academic Publishers.

Wang, L., Bridges, S.M., Boggess, L.C. and Varco, J.J. (2000) Neural network classification of leaf reflectance spectra for predicting nutrient deficiency of cotton. In Intelligent engineering systems through artificial neural networks, vol. 10, eds. Dagli et al., pp. 1037-1043. ASME Press.